An update is currently in the process of being finalized that will reimburse all skillpoints lost when skill queues were inadvertently paused on June 9th.
We aim to deploy this early next week, and will notify all pilots via this news feed once the process is complete.
Apologies for the delay in reimbursement, which has been slowed up a little by the ongoing Ghost Training exploit investigation.
Feel free to discuss this news item in this announcement thread.